Diploid Genome Assembly of the Wine Grape Carménère
Andrea Minio, Mélanie Massonnet, Rosa Figueroa-Balderas, Alvaro Castro and Dario Cantu
G3: GENES, GENOMES, GENETICS Early online March 28, 2019; https://doi.org/10.1534/g3.119.400030
Genome length: 1,043,140,749 Number of sequences: 9,380 Average sequence length: 111,209.04 Median seqence length 33,992 Minimum sequence length: 507 Maximum sequence length: 5,905,621 N25 length: 1,235,567 Index: 124 N50 length: 412,996 Index: 507 N75 length: 113,579 Index: 1,729 N90 length: 37,096 Index: 4,317 Sequences > 500b - Count: 9,380 Cumulative length: 1,043,140,749 Sequences > 1Kb - Count: 9,359 Cumulative length: 1,043,124,834 Sequences > 5Kb - Count: 9,164 Cumulative length: 1,042,503,057 Sequences > 10Kb - Count: 8,686 Cumulative length: 1,038,770,452 Sequences > 50Kb - Count: 3,292 Cumulative length: 895,146,319 Sequences > 100Kb - Count: 1,872 Cumulative length: 797,707,166 Sequences > 500Kb - Count: 402 Cumulative length: 474,122,780 Sequences > 1Mb - Count: 174 Cumulative length: 317,843,538 Sequences > 5Mb - Count: 3 Cumulative length: 17,025,791
Num of Feat Cumulative Length Max Average St Dev Loci lengths 73,109 256,934,202 142,812 3,514.40 5,776.10 mRNAs lengths 73,109 256,934,202 142,812 3,514.40 5,776.10 Intergenic regions lengths 66,050 569,801,844 321,943 8,626.83 13,794.94 Exons lengths 296,164 71,515,983 7,992 241.47 328.69 Exons count/mRNA 60 4.05 4.17 Introns lengths 223,055 185,418,219 141,659 831.27 1,780.96 CDSs exons lengths 296,164 71,515,983 7,992 241.47 328.69 CDSs exons count/mRNA 60 4.05 4.17 mRNAs sequences lengths 73,109 71,515,983 14,328 978.21 786.56 CDSs sequences lengths 73,109 71,515,936 14,328 978.21 786.56 Protein sequences lengths 73,109 23,837,875 4,776 326.06 262.19
Genome length: 622,795,289 Number of sequences: 1,411 Average sequence length: 441,385.75 Median seqence length 193,714 Minimum sequence length: 20,364 Maximum sequence length: 5,905,621 N25 length: 1,877,721 Index: 55 N50 length: 1,039,379 Index: 168 N75 length: 451,240 Index: 397 N90 length: 202,939 Index: 696 Sequences > 100b - Count: 1,411 Cumulative length: 622,795,289 Sequences > 500b - Count: 1,411 Cumulative length: 622,795,289 Sequences > 1Kb - Count: 1,411 Cumulative length: 622,795,289 Sequences > 5Kb - Count: 1,411 Cumulative length: 622,795,289 Sequences > 10Kb - Count: 1,411 Cumulative length: 622,795,289 Sequences > 50Kb - Count: 1,201 Cumulative length: 615,783,550 Sequences > 100Kb - Count: 947 Cumulative length: 597,265,472 Sequences > 500Kb - Count: 369 Cumulative length: 454,212,928 Sequences > 1Mb - Count: 174 Cumulative length: 317,843,538 Sequences > 5Mb - Count: 3 Cumulative length: 17,025,791
Num of Feat Cumulative Length Max Average St Dev Loci lengths 40,684 153,833,011 142,812 3,781.17 6,333.65 mRNAs lengths 40,684 153,833,011 142,812 3,781.17 6,333.65 Intergenic regions lengths 39,351 405,613,626 321,943 10,307.58 16,008.43 Exons lengths 168,416 42,123,229 7,992 250.11 348.29 Exons count/mRNA 60 4.14 4.36 Introns lengths 127,732 111,709,782 141,659 874.56 1,920.38 CDSs exons lengths 168,416 42,123,229 7,992 250.11 348.29 CDSs exons count/mRNA 60 4.14 4.36 mRNAs sequences lengths 40,684 42,123,229 14,328 1,035.38 827.88 CDSs sequences lengths 40,684 42,123,214 14,328 1,035.38 827.88 Protein sequences lengths 40,684 14,040,845 4,776 345.12 275.96
Genome length: 420,345,460 Number of sequences: 7,969 Average sequence length: 52,747.58 Median seqence lengthi: 29,398 Minimum sequence length: 507 Maximum sequence length: 743,383 N25 length: 231,329 Index: 295 N50 length: 89,565 Index: 1,029 N75 length: 38,272 Index: 2,921 N90 length: 23,191 Index: 5,025 Sequences > 500b - Count: 7,969 Cumulative length: 420,345,460 Sequences > 1Kb - Count: 7,948 Cumulative length: 420,329,545 Sequences > 5Kb - Count: 7,753 Cumulative length: 419,707,768 Sequences > 10Kb - Count: 7,275 Cumulative length: 415,975,163 Sequences > 50Kb - Count: 2,091 Cumulative length: 279,362,769 Sequences > 100Kb - Count: 925 Cumulative length: 200,441,694 Sequences > 500Kb - Count: 33 Cumulative length: 19,909,852 Sequences > 1Mb - Count: 0 Cumulative length: 0 Sequences > 5Mb - Count: 0 Cumulative length: 0
Num of Feat Cumulative Length Max Average St Dev Loci lengths 32,425 103,101,191 97,147 3,179.68 4,968.94 mRNAs lengths 32,425 103,101,191 97,147 3,179.68 4,968.94 Intergenic regions lengths 26,699 164,188,218 204,635 6,149.60 9,097.77 Exons lengths 127,748 29,392,754 7,992 230.08 300.52 Exons count/mRNA 51 3.94 3.93 Introns lengths 95,323 73,708,437 68,392 773.25 1,573.04 CDSs exons lengths 127,748 29,392,754 7,992 230.08 300.52 CDSs exons count/mRNA 51 3.94 3.93 mRNAs sequences lengths 32,425 29,392,754 11,352 906.48 725.07 CDSs sequences lengths 32,425 29,392,722 11,352 906.48 725.07 Protein sequences lengths 32,425 9,797,030 3,784 302.14 241.70
Cantu Lab     |     Webmaster: Dr. Andrea Minio (aminio[at]ucdavis.edu).